Fig. 3

Y-chromosome haplogroup and phylogeny of complete mitogenomes from modern cattle. a Median-joining (MJ) network of Y-chromosome haplotypes using 745 SNPs. b Rooted maximum-likelihood phylogenetic tree detailing the relationships among all available bovine haplogroups of I, P, Q, R and T mitogenomes, an American bison mitogenome and three yak mitogenomes. c MJ network of mitogenomes from Bos indicus. The black line and circle in b and c represent published reference sequences, respectively