Table 1 Selection and sequencing of BACs targeting the gene-rich part of the sugarcane monoploid genome
From: A mosaic monoploid reference sequence for the highly complex genome of sugarcane
Selection and sequencing of a sugarcane minimum tiling path (MTP) of BACs | Sugarcane single tiling path (STP) | |||||
|---|---|---|---|---|---|---|
Sorghum chromosome (Mb) | Nb of sugarcane BACs anchored | Nb of BACs sequenced (Mb) | Mosaic super scaffolds (Mb) | Genes | TE | |
Nb | % | % | ||||
Sb01 (81) | 1924 | 778 (94) | Sh01 (67) | 4614 | 15 | 44 |
Sb02 (78) | 1598 | 594 (68) | Sh02 (49) | 3270 | 13 | 43 |
Sb03 (74) | 1624 | 634 (74) | Sh03 (51) | 3540 | 14 | 43 |
Sb04 (69) | 1261 | 496 (56) | Sh04 (42) | 2881 | 14 | 44 |
Sb05 (72) | 827 | 289 (33) | Sh05 (22) | 1337 | 11 | 41 |
Sb06 (61) | 1060 | 404 (48) | Sh06 (33) | 2189 | 13 | 45 |
Sb07 (66) | 871 | 305 (36) | Sh07 (28) | 1903 | 13 | 42 |
Sb08 (63) | 623 | 265 (31) | Sh08 (23) | 1381 | 12 | 43 |
Sb09 (59) | 891 | 391 (46) | Sh09 (34) | 2143 | 13 | 44 |
Sb10 (61) | 1053 | 379 (45) | Sh10 (32) | 2058 | 16 | 43 |
683 Mb | 11,732 | 4535 (531 Mb) | 382 Mb | 25,316 | 13 | 43 |
