Table 1 Mass spectrometry summary of the FLAG–PCNA complexes

From: SUMO2 conjugation of PCNA facilitates chromatin remodeling to resolve transcription-replication conflicts

Number of peptides identified by mass spectrometry

KR IP

S2-KR IP

PCNA (29 kDa)

215

178

SUMO2 (11 kDa)

1

18

RFC complex

  

 RFC1 (128 kDa)

22

22

 RFC2 (39 kDa)

14

13

 RFC3 (41 kDa)

3

9

 RFC4 (40 kDa)

14

13

 RFC5 (38 kDa)

16

12

MCM2-7

  

 MCM2 (102 kDa)

1

1

 MCM3 (91 kDa)

5

4

 MCM4 (97 kDa)

19

19

 MCM5 (82 kDa)

8

8

 MCM6 (93 kDa)

10

9

 MCM7 (81 kDa)

19

22

Pol δ

  

 DPOD1 (124 kDa)

4

11

 DPOD3 (51 kDa)

2

2

 PDIP3 (46 kDa)

3

1

Pol ε

  

 DPOE1 (261 kDa)

4

5

 DPOE3 (60 kDa)

1

0

FEN1 (43 kDa)

7

8

LIG1 (102 kDa)

7

12

Mismatch repair

  

 MSH2 (105 kDa)

22

18

 MSH3 (127 kDa)

7

7

 MSH6 (153 kDa)

26

16

CAF1 complex

  

 CAF1A (107 kDa)

0

22

 CAF1B (62 kDa)

4

15

 RBBP4 (48 kDa)

7

9

  1. Numbers of peptides detected by mass spectrometry for each of the indicated proteins co-purified with KR and the S2-KR FLAG–PCNA protein complexes isolated from the chromatin-bound (CB) fractions of HEK293T cells expressing the indicated FLAG-tagged proteins