Table 1 Known DNA-binding motifs enriched in the noncoding regions of the pannier locus

From: Repeated inversions within a pannier intron drive diversification of intraspecific colour patterns of ladybird beetles

Category

Allele/species

Upstream intergenic region

Upstream region of the first intron

Downstream region of the first intron

Allele-/species-specifically enriched motifs

h C

EcR, Foxo

En, Exd, H, HLH106, Mad, Myc, Mnt, Ss, Pad, Pan, Poxn, Sd, Tgo, Tai, Vvl

Ab, B-H1, Crc, Crol, Dr, Rn, Sd

 

h A

Exd, Pan, Vvl

Ab, Brk, Pnr, Spps, Usp,

Usp

 

h

Kni, Rn, Sqz

Ab, Ato, Ets21C, Rn, Sqz

Al, B-H1, Lms, Nub, Sqz, Tup

 

C. sep

Ato, EcR, H, Ss, Tgo

B-H2, Eg, Pnr, Tai, Tgo

Brk, E(spl)mβ, H, Ken, Tai, Tgo

Commonly enriched motifs

H. axy

Ab, Brk, Mad, Taxi, Tgo

Al, Brk, E(spl)m E(spl)mβ, Exd, Hth, Lms, Mad, Tai, Tgo, Tx

Dr, En, Inv, Med, Sens, Slou, Unpg

 

H. axy & C. sep

Mad

Exd, Hth, Lms, Mad, Tai, Tgo

—

Region size (bp)

h C

38,192 (F2-3)/51,566 (NT6)

71,107 (F2-3)/76,264 (NT6)

47,450 (F2-3)/44,236 (NT6)

 

h A

42,826

75,417

52,210

 

h

40,778

67,340

67,340

 

C. sep

20,370

56,564

18,432

  1. Enriched DNA-binding motifs of Drosophila transcription factors involved in wing formation are listed (p < 0.05). The Scalloped binding motif (Sd) discussed in the text is underlined.
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