Table 1 Rank, name, and in vitro binding results for three representative uncharacterized sRNAs
Rank | mRNA | INTERFACE-informed or top-ranked? | In vitro binding? |
|---|---|---|---|
SroE | Â | Â | Â |
3 | yieH | Top-ranked | No |
5 | yeaG | Top-ranked | No |
9 | yahN | Top-ranked | No |
10 | mdtA | Top-ranked | No |
12 | creA | Top-ranked | No |
18 | arcC | INTERFACE | No |
32 | pdxY | INTERFACE | No |
38 | marC | INTERFACE | No |
46 | ligB | INTERFACE | Yes (weak) |
61 | fadH | INTERFACE | No |
SroG | Â | Â | Â |
4 | cdsA | Both | Yes |
5 | cysJ | Both | Yes |
7 | yfbR | Both | Yes |
10 | yncD | Both | Yes |
12 | mepM | Both | Yes |
64 | potA | INTERFACE | Yes |
65 | dosP | INTERFACE | No |
75 | pgl | INTERFACE | Yes |
76 | fecE | INTERFACE | Yes (weak) |
Tpke70 | Â | Â | Â |
3 | agaS | Top-ranked | Yes (weak) |
6 | dkgB | Both | No |
7 | mcrA | Both | Yes |
12 | mdoB | Both | No |
13 | dbpA | Both | No |
14 | degS | Both | No |
19 | torT | INTERFACE | Yes |
29 | glnK | INTERFACE | Yes |
