Fig. 5
From: Arabidopsis AGDP1 links H3K9me2 to DNA methylation in heterochromatin
agdp1 affects H3K9 dimethylation and suvh4/5/6-dependent CHG and CHH methylation. a Venn diagrams showing the overlap of hypo-DMRs between agdp1 and suvh4/5/6 in CG, CHG, and CHH contexts. Box plots represent CG, CHG, and CHH methylation levels of overlapping or unique hypo-DMRs in the upper Venn diagrams. Yellow, blue, and red boxes indicate DNA methylation levels in the wild-type, agdp1-1, and suvh4/5/6, respectively. b Western blot analysis of H3 lysine methylation status in wild-type Col-0 plants and in agdp1-1, agdp1-2, and Flag-AGDP1 transgenic plants in the agdp1-1 mutant background with the antibodies specified on the right. c Box plots of levels of H3K9me2 relative to H3 in agdp1-1 CG, CHG, and CHH hypo-DMRs. The y axis represents the ChIP-seq read density normalized by H3
