Table 2 Mouse/rat kidney datasets
From: Bulk tissue cell type deconvolution with multi-subject single-cell expression reference
Name | Journal | Year | Accesession # | Tissue type | Data type | Protocol | # Samples | # Cells | # Genes | # Cell types |
|---|---|---|---|---|---|---|---|---|---|---|
Park et al.1 | Science | 2018 | Kidney | Single-cell RNA-seq | 10x | 7 health, male | 43,745 | 16,273 | 14 + 2 novel | |
Beckerman et al.12 | Nature Medicine | 2017 | Kidney | Bulk RNA-seq | Illumina HiSeq 2500 | 10 (6 control + 4 APOL1) | NA | 19,033 | NA | |
Lee et al.13 | JASN | 2015 | Kidney tubule | Bulk RNA-seq | Illumina HiSeq 2000 | 118 replicates (14 segments) | NA | 10,903 | NA | |
Craciun et al.11 | JASN | 2015 | Kidney | Bulk RNA-seq | Illumina HiSeq 2000 | 18 replicates (6 time points) | NA | 25,219 | NA | |
Arvaniti et al.10 | Scientific Reports | 2016 | Kidney | Bulk RNA-seq | Illumina HiSeq 2000 | 10 replicates (Sham + 2 time points) | NA | 38,683 | NA |
