Fig. 5 | Nature Communications

Fig. 5

From: Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity

Fig. 5

Resolution of hard to assemble repetitive and polymorphic regions. a Violin plot of repeat lengths >2 kb for LINE/L1, LINE/RTE-BovB and satellite/centromeric repeats for ARS1, UMD_CASPUR_WB_2.0 and UOA_WB_1 assemblies. b Dot plot of a ~218 kb region of MHC class II in UOA_WB_1 (horizontal) against UMD_CASPUR_WB_2.0 (vertical) showing a substantial level of repetition throughout the region. c Resolved MHC class II genes present on the single contig in UOA_WB_1 also shown in b. Protein-coding genes in UOA_WB_1 are shown for the same single contig, with assembly gaps for the same region in UMD_CASPUR_WB_2.0

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