Fig. 5
From: Pervasive function and evidence for selection across standing genetic variation in S. cerevisiae
Using local phylogeny to accurately infer homoplasy. a Example phylogeny of a hypothetical variant that (left) emerged only once and (right) independently emerged twice. b Schematic of the in silico mutagenesis and mating procedure used to generate simulated admixed populations. c Schematic of the sliding phylogenetic window approach used to account for admixture. d Actual and inferred homoplasy based on this approach for N = 25 simulated populations with structure similar to that of the SGRP collection; bars show the mean. Source data are provided as a Source Data file
