Table 1 Summary of phenotypes used to perform GWAS using the WGS catalog
Phenotype | Number dogs | Number cases/controls | Number variants | Best P value | Bonferroni threshold: (−log 10 (0.05/Nb.variants)) | Nb. Variants passing Bonferroni threshold |
|---|---|---|---|---|---|---|
Canids catalog | 722 | — | 76854926 | — | — | — |
Kinship | 268 | — | 14489676 | — | — | — |
Aggressiveness | 63 | — | 13191759 | 1.27E-07 | 0 | |
Boldness | 65 | 29/36 | 13545961 | 1.01E-10 | 8.42 | 21 |
Bulky | 257 | 21/239 | 14437654 | 3.79E-57 | 8.43 | 1797 |
Drop ears | 214 | 113/101 | 14426181 | 7.63E-24 | 8.46 | 1100 |
Furnishing | 257 | 59/198 | 14387349 | 1.06E-68 | 8.46 | 976 |
Hairless | 268 | 6/262 | 14489548 | 3.16E-67 | 8.46 | 3908 |
Height | 255 | — | 14416697 | 6.35E-27 | 8.46 | 1074 |
Large ears | 213 | 31/182 | 14457478 | 4.91E-41 | 8.46 | 1242 |
Lengh of fur | 215 | 89/126 | 14352965 | 4.71E-20 | 8.46 | 43 |
Life span | 242 | — | 14670938 | 1.77E-09 | 8.46 | 4 |
Long legs | 102 | 22/80 | 13732336 | 6.24E-14 | 8.44 | 569 |
Muscled | 244 | 52/192 | 14809625 | 2.69E-15 | 8.46 | 1175 |
Tail curl | 173 | — | 14637750 | 4.47E-11 | 8.47 | 461 |
Weight | 255 | — | 14416697 | 4.04E-23 | 8.46 | 938 |
White chest | 195 | 100/195 | 14847812 | 3.75E-19 | 8.47 | 50 |
White head | 179 | 57/122 | 14386917 | 5.99E-29 | 8.46 | 94 |
