Table 1 Illumina Miseq library preparation primers

From: Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage

Conc. (nM)

Primer ID

Sequence

 

RT-PCR

 

500

3′IgM (OUTER)

CCACTTCGTTTGTATCCAACG

500

3′IgG (OUTER)

GCCGGGAAGGTGTGCACGCCGCTGGTC

500

3′IgK (OUTER)

GTCCTGCTCTGTGACACTCTC

500

3′IgL (OUTER)

TGTTGCTCTGTTTGGAGGG

 

PCR 1

 

800

3′IgM (INNER)

GCATTCTCACAGGAGACGAGG

800

3′IgG (INNER)

CCGGTTCAGGGAAGTAGTCCTTGAC

800

3′IgK (INNER)

ATTCAGCAGGCACACAACAGAGGC

800

3′IgL (INNER)

AGACACACTAGTGTGGCCTTG

800

vv535: Step out primer

GACAAGCAGTGGTATCAACGCAG

 

PCR 2

 

400

MiSeq HsRh IgM CH1 R

GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGGGTTGGGGCGGATGCACT

400

MiSeq HsRh IgG CH1 R

GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGGGGGAAGACCGATGGGCCCTT

400

MiSeq HsRh IgK CL1 R

GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGAAGACAGATGGTGCAGCC

400

MiSeq HsRh IgL CL1 R

GTCTCGTGGGCTCGGAGATGTGTATAAGAGACAGGGAACAGAGTGACCGTGGG

400

vv539: MiSeq-adapted step out primer

TCGTCGGCAGCGTCAGATGTGTATAAGAGACAGCACTCTATCCGACAAGCAGTGGTATC

  1. Italicized bases = MiSeq adapter