Table 2 Cryo-EM data collection, refinement parameters and model statistics

From: Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage

Data collection and processing

BG505:BF520.1 complex

(EMDB-9166)

(PDB 6MN7)

Magnification

130,000

Voltage (kV)

300

Electron exposure (e–/Å2)

66

Defocus range (μm)

1.0–3.5

Pixel size (Ã…)

0.55

Symmetry imposed

C3

Initial particle images (no.)

559,022

Final particle images (no.)

118,972

Map resolution (Ã…)

4.8

   FSC threshold

0.143

Map resolution range (Ã…)

4.53–7.52

Refinement

 

 Initial model used (PDB code)

–

 Model resolution (Å)

9.02

    FSC threshold

0.143

 Model resolution range (Å)

9.02

 Map sharpening B factor (Å2)

−179.793

 Model composition

 

    Non-hydrogen atoms

21,447

    Protein residues

2595

    Ligands

192

R.m.s. deviations

 

    Bond lengths (Å)

0.85

    Bond angles (°)

0.96

Validation

 

    Clashscore

35

    Poor rotamers (%)

1

Ramachandran plot

 

    Favored (%)

89

    Allowed (%)

9

    Disallowed (%)

2