Table 2 Cryo-EM data collection, refinement parameters and model statistics
Data collection and processing | BG505:BF520.1 complex (EMDB-9166) (PDB 6MN7) |
---|---|
Magnification | 130,000 |
Voltage (kV) | 300 |
Electron exposure (e–/Å2) | 66 |
Defocus range (μm) | 1.0–3.5 |
Pixel size (Ã…) | 0.55 |
Symmetry imposed | C3 |
Initial particle images (no.) | 559,022 |
Final particle images (no.) | 118,972 |
Map resolution (Ã…) | 4.8 |
   FSC threshold | 0.143 |
Map resolution range (Å) | 4.53–7.52 |
Refinement | Â |
 Initial model used (PDB code) | – |
 Model resolution (Å) | 9.02 |
    FSC threshold | 0.143 |
 Model resolution range (Å) | 9.02 |
 Map sharpening B factor (Å2) | −179.793 |
 Model composition |  |
    Non-hydrogen atoms | 21,447 |
    Protein residues | 2595 |
    Ligands | 192 |
R.m.s. deviations | Â |
    Bond lengths (Å) | 0.85 |
    Bond angles (°) | 0.96 |
Validation | Â |
    Clashscore | 35 |
    Poor rotamers (%) | 1 |
Ramachandran plot | Â |
    Favored (%) | 89 |
    Allowed (%) | 9 |
    Disallowed (%) | 2 |