Fig. 4 | Nature Communications

Fig. 4

From: Side chain to main chain hydrogen bonds stabilize a polyglutamine helix in a transcription factor

Fig. 4

The structures of polyQ helices feature sc(i) → mc(i −4) hydrogen bonds. a Frequencies of the various types of hydrogen bonds involving Gln side chains in the aggregated reweighted trajectories. b Frequencies of sc(i) → mc(i − 4) hydrogen bonds in the reweighted ensembles obtained for peptides L4Q4 to L4Q20 as a function of the position of the corresponding residue in the tract. c Distributions of the χ1, χ2, and χ3 dihedral angles of Gln side chains and of the subset of those side chains involved in sc(i) → mc(i −4) hydrogen bonds with an illustration of the values of the four side chains highlighted in d. d Frame of the trajectory obtained for L4Q16 where residues Q1 and Q4 (in purple), but not Q2 and Q3 (in black), are involved in sc(i) → mc(i − 4) hydrogen bonds with the CO groups of residues L1 and L4, shown in purple, with an indication of the conventional mc(i)→mc(i − 4) hydrogen bonds, shown in yellow. The Leu side chains are not shown, for clarity

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