Table 1 Biotic and abiotic stress-related genes are preferentially regulated by LUX

From: LUX ARRHYTHMO mediates crosstalk between the circadian clock and defense in Arabidopsis

 

Differentially expressed >2×

Upregulated

Downregulated

Response to abiotic and biotic stimuli

Col-0 vs. lux-1 ZT1 (a)

661

285

376

13.0%

Col-0 vs. lux-1 ZT13 (b)

170

127

43

17.4%

acd6-1 vs. acd6-1lux-1 ZT1 (c)

1068

311

757

12.7%

acd6-1 vs. acd6-1lux-1 ZT13 (d)

143

100

43

15.6%

a + b + c + d

1618

—

—

11.1%

Whole genome genes

—

—

—

5.4%

  1. The number of genes whose expression was affected in lux-1 relative to Col-0 more than two-fold is listed for each comparison group. Gene Ontology annotations were used to assign genes into functional groups72
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