Fig. 3
From: Genomic signatures of heterokaryosis in the oomycete pathogen Bremia lactucae
Polyphyly of downy mildews and paraphyly of Phytophthora spp. Phylogenetic maximum likelihood tree based on the analysis of 18 BUSCO protein sequences across 29 Peronosporaceae species rooted with Pythium ultimum as the outgroup. The 20 Phytophthora species were selected to represent assemblies from the nine published Phytophthora clades indicated by the number in brackets. No assembly from Phytophthora clade 9 was available. Downy mildew clades 1 and 2 are shown in red and blue, respectively. Support for nodes is shown as percent bootstrap values from 1000 iterations of the nucleotide/protein alignments. The output nucleotide and protein trees only disagreed in the order of Phytophthora clade 1 species and are indicated by -- nucleotide support. Scale is the mean number of amino acid substitutions per site. Nucleotide and protein decatenated alignments and output trees are provided as Source Data
