Fig. 7
pAB5 differentially modifies the expression of chromosomal genes. DEGs with adjusted p-value < 0.1 for shaking (a) and static (b) grown conditions are depicted as a volcano plot to show the relationship between Log2 fold change and statistical significance. Each circle depicts one gene, upregulated genes are blue and downregulated genes are red, with the accession number shown for select genes. Pink shadow highlights the genes encoding for CUP1 pili, yellow shadow highlights the genes encoding for CUP2 pili, orange shadow highlights the genes of PNAG biosynthetic pathway and green shadow highlights the genes encoding for the T6SS. Three biological replicates of each condition were analyzed. All genes in the transcriptomic volcano plot with adjusted p-values above the statistical cut off of 0.1 (i.e., not significantly different between conditions) per the DESeq2 vignette are in gray, while the genes with adjusted p-values below 0.1 are blue or red
