Fig. 5
From: Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
Compositional estimation in the HMP7 and Zymo experiment at the genus level. The figure shows the compositions inferred by MetaMaps, Centrifuge, Bracken, LAST + MEGAN-LR, and the assumed true composition. The L1 bar shows the combined L1 distance between the inferred and the true compositions. Note that the Acinetobacter, Actinomyces, and Rhodobacter genomes present in the HMP7 sequencing sample are not part of the database; reads classified as belonging to these genera map to other genomes of the same species/genus (see “Evaluating HMP7 performance” in Materials and methods). All but one fungal species (Cryptococcus neoformans) present in the Zymo sample are represented in the database
