Fig. 3 | Nature Communications

Fig. 3

From: A machine-compiled database of genome-wide association studies

Fig. 3

Linkage disequilibrium between GWASkb variants not present in existing human curated databases and variants from the GWAS Catalog. We use the 1000 Genomes dataset to estimate the r2 metric between pairs of variants, and report distances from each GWASkb variant to the most correlated GWAS Catalog SNP reported in the same paper. The distribution of r2 scores is highly multimodal; many GWASkb variants are uncorrelated (r2 = 0) with GWAS Catalog SNPs. Reported p values are generated from χ2 test

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