Table 1 Data collection and refinement statistics

From: The structure of a polygamous repressor reveals how phage-inducible chromosomal islands spread in nature

 

BovI-StlC-ter

DutϕO11-BovI-StlC-ter

BovI-StlN-ter

Dutϕ11-BovI-StlN-ter

Data collection

Beamline

ALBA-XALOC

ALBA-XALOC

DLS I0–3

DLS I-04

Wavelength (Å)

0.97906

0.97926

0.97623

0.9282

Space group

P321

I23

C2

P321

Cell dimensions (Å)

a = b = 77.4 c = 37.3 α = β = 90 γ = 120

a = b = c = 122.9 α = β = γ = 90

a = 132.5 b = 34.6 c = 37.0 α = γ = 90 β = 95.96

a = b = 144.5 c = 149.4

α = β = 90 γ = 120

Resolution (Å)a

67.0–2.2

(2.32–2.2)

86.9–2.9

(3.08–2.9)

33.6–1.8

(1.83–1.8)

95.9–2.52

(2.56–2.52)

Total reflections

1,119,769 (14,043)

232,953 (37,049)

100,090 (4685)

649,186 (27,668)

Unique reflections

6522 (843)

7002 (1110)

15,780 (777)

61,269 (3036)

Completeness (%)

96.7 (88.3)

100 (100)

100 (99.4)

100 (100)

Multiplicity

18.4 (16.7)

33.3 (33.4)

6.3 (6.0)

10.6 (9.1)

Mean I/σ(I)

14.4 (2.8)

23.7 (4.8)

12.4 (9.7)

12 (1.2)

Rpim

0.027 (0.253)

0.018 (0.183)

0.09 (0.574)

0.052 (0.745)

CC 1/2

0.999 (0.933)

1 (0.913)

0.985 (0.568)

0.999 (0.477)

Refinement

R work

0.248

0.253

0.172

0.197

R free

0.263

0.305

0.216

0.240

Number of atoms

684

1727

1303

9321

Protein

665

1709

1208

9072

Water

19

18

85

193

Others

-

-

10b

56c

Rmsd, bonds (Å)

0.008

0.009

0.0183

0.0147

Rmsd, angles (°)

1.10

1.50

1.782

1.734

MolProbity Clashscore

(Percentile)

6.69

(98th)

21.18

(91 st)

2.92

(99th)

3.34

(100th)

Ramachandran plot

Preferred (%)

97.626

94.2

98.6

98.5

Allowed (%)

2.74

5.8

1.4

1.5

Outliers (%)

0

0

0

0

PDB ID codes

6H48

6H4B

6H49

6H4C

  1. aNumber in parentheses indicate values for the highest-resolution cell
  2. b Atoms corresponds to two sulfate molecules
  3. cAtoms correspond to two Mg ions, five Ni ions, and seven di-(hydroxyethyl)-ether molecules