Fig. 5
From: Identification of significant chromatin contacts from HiChIP data by FitHiChIP
FitHiChIP calls are reproducible among replicates and across different resolutions. a Overlap between loop calls of different methods for the two biological replicates of GM12878 H3K27ac HiChIP data19. Overlapping loops are determined using 5 kb slack (see Methods), and overlap with respect to individual samples are separately shown. b Reproducibility of FitHiChIP results between 5 and 2.5 kb resolution loop calls for different HiChIP datasets. The number of all 2.5 kb loops as well as those overlapping with (i.e., contained within) a 5 kb loop call are listed for each dataset. For the 5 kb loops that overlap at least one 2.5 kb loop, the breakdown of five different possible configurations are illustrated with percentages of such cases shown for each dataset. Source data are provided as a Source Data file
