Fig. 3 | Nature Communications

Fig. 3

From: Long-read assembly of the Chinese rhesus macaque genome and identification of ape-specific structural variants

Fig. 3

Structural variants (SVs) in rheMacS. a The distribution of large SVs (≥ 1 Kbp) among the rhesus macaque chromosomes. The histogram marks on each chromosome (light blue on the left) indicate the counts of SVs based on per 500 Kbp windows. The black dot on each chromosome indicates the centromere position. b The percentages of the four SV types including deletions (DEL), insertions (INS), duplications (DUP), and inversions (INV). c The SV distribution along with the increase of telomere distance. The SVs are counted with a sliding window size of 500 Kbp. The multicolor dots refer to the four-type SV counts in a 500 Kbp bin, and the solid lines indicate the distribution of average counts. d The length statistics of the rheMacS SVs. e Overlaps of the rheMacS SVs with previously reported SVs by aCGH and NGS data. The overlap cutoff is set to require > 50% reciprocal overlapping of SV length

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