Fig. 7: Differentially expressed genes in YIL25, the complementation line, overexpression line, and Teqing revealed by RNA-seq analysis.
From: A common wild rice-derived BOC1 allele reduces callus browning in indica rice transformation
a Hierarchical clustering of 410 differentially expressed genes (DEGs) upregulated in YIL25 compared to Teqing, DEGs upregulated in the complementation line (pCPL) compared to Teqing, and DEGs downregulated in the overexpression line (pOE) compared to Teqing (UUD). b Hierarchical clustering of 290 DEGs downregulated in YIL25 compared to Teqing, DEGs downregulated in pCPL compared to Teqing, and DEGs upregulated in pOE compared to Teqing (DDU). c Hierarchical clustering of DEGs associated with stress response and cell death. The numbers in the boxes represent the number of genes per cluster.
