Table 2 Summary of the repeat sequence distribution in the teff genome.
Class | Subclass | Superfamily | Number of families | Loci | Size (Mb) | Genome % |
|---|---|---|---|---|---|---|
SSR | SSR | NA | 1 | 116,936 | 5.2 | 0.9 |
Class I | LTR | Gypsy | 944 | 54,384 | 71.8 | 12.4 |
LTR | Unknown | 946 | 55,889 | 32.5 | 5.6 | |
LTR | Copia | 330 | 13,571 | 11.6 | 2 | |
LINE | L1 | 37 | 2784 | 1.6 | 0.3 | |
LINE | I | 5 | 17 | 0 | ~0 | |
SINE | Unknown | 109 | 14,909 | 2.4 | 0.4 | |
Class II | TIR | Tc1 | 793 | 81,715 | 14.9 | 2.6 |
TIR | CACTA | 266 | 25,197 | 4.4 | 0.8 | |
TIR | hAT | 77 | 7084 | 1.4 | 0.2 | |
TIR | PIF | 48 | 5746 | 1.1 | 0.2 | |
TIR | Mutator | 26 | 3238 | 0.6 | 0.1 | |
TIR | Unknown | 1 | 247 | 0 | ~0 | |
Helitron | Helitron | 105 | 21,977 | 5.6 | 1 | |
Total | Â | Â | Â | 153.1 | 26.5 |
