Table 1 Summary of i2QTL variants called from samples in the HipSci and iPSCORE collections.

From: Discovery and quality analysis of a comprehensive set of structural variants and short tandem repeats

Variant class

No. of variants

No. of common variants

SNV

41,826,418

7,013,178

INDEL

7,040,457

1,862,365

Deletion (DEL)

16,238

3,490

Duplication (DUP)

2693

416

Multiallelic CNV (mCNV)

1703

949

Other SV (BND)

4612

1,377

Inversion (INV)

210

92

Reference mobile element insertions (rMEI)

2343

1689

ALU

7880

2385

LINE1

1175

262

SVA

442

115

Short tandem repeats (STR)

588,189

381,053

Total SV

37,296

10,775

Total SV/STR

625,485

391,828

Total

49,492,360

9,267,371

  1. Common variants are defined as those with ≥5% non-mode allele frequency (NMAF) for SVs and STRs and ≥5% MAF for SNVs and indels.
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