Table 2 List of breakpoint-spanning primers.

From: Partner independent fusion gene detection by multiplexed CRISPR-Cas9 enrichment and long read nanopore sequencing

SS18 fwd

CTGCTTGCCTCAACTAGAAAC

SSX1 rev

ATGAGCTTTAAATGGCTTGG

PAX3 fwd

CAAGTCAAGACTGTGATAGGC

FOXO1 rev

CAACCCTTCCATGACTCTTC

FOXO1 fwd

CCATATTCCACCTGAAGAGC

PAX3 rev

GCTTATAATCAAAGGCAGTGG

BCR fwd

AACGAATGTTGTGGGAAGTC

ABL1 rev

GCCCAAGATTATGTCTCCAG

DRICH1 fwd

TCACCCACATGGTCTGTAAG

BCR rev

ATCTCCTCAGGGAGAGTGAC

AGAP3 fwd

AGCGCCTTCAGCGACTACT

BRAF rev

GCAGACAAACCTGTGGTTGA

TRIM24 fwd

CTGTGAGGACAACGCAGAAG

BRAF rev

GCAGACAAACCTGTGGTTGA

KMT2A fwd 1

CCAGGGATCTGTCTACCTTG

MLLT2 rev

CGTTTAAACCCTCCCTATTTC

MLLT2 fwd

AAGTGCTGGGATTACAGGTG

KMT2A rev 1

TGCTAAGTGACCTAAGAGTGG

MLLT4 fwd

TTGTATCCCTTGACCATTTG

KMT2A rev 2

ATGTGAGCCACCACACTATC

KMT2A fwd 2

CCAGGAATTCAAGGCTGTAG

MLLT1 rev

CTAGCATGTGGAGGAGACAG

KMT2A fwd 3

ATGGCAGTGGCATTAAGAG

MLLT3 rev

CTTAGGTCACTTAGCATGTTCTG

MLLT3 fwd

ATTCATACCCACACCCAAAG

KMT2A rev 3

GTCTCGAACTCCTGGCTTC

KMT2A inversion fwd

TGTTCTAGCCTAGGAATCTGC

KMT2A inversion rev

GCAGCACAGTGACACACAG

KMT2A translocation fwd

ATGTGAGCCACCACACTATC

MLLT4 translocation rev

ACAGACAGACGGCAAAGAG

KMT2A inversion fwd

TGTTCTAGCCTAGGAATCTGC

MLLT4 translocation rev

ACAGACAGACGGCAAAGAG

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