Table 1 Search, visualization, analysis/integration, and download functionalities provided by each of the PCAWG data resources.

Search by demographic data, specimen phenotype, molecular subtype

Y

Y

Y

Search by genes and/or variants

Y

Y

Y

Y

Search by genomic coordinates

Y

Y

Visualize multiple types of data together

Y

Y

Y

Y

Visualize coding variants

Y

Y

Y

Y

Visualize non-coding variants

Y

Y

Y

Visualize structural variants

Y

Y

Y

Visualize mutational signatures and predicted drivers

Y

Visualize genome-wide profiles, including LOH, in Circos plots

Y

Visualize tissue expression on a human figure

Y

Visualize gene co-expression

Y

Y

Visualize pathways, therapeutic associations

Y

Y

Visualize summary of BAMs/VCFs

Y

Kaplan–Meier analysis with statistics

Y

Y

Y

Gene set/pathway enrichment analysis

Y

Y

Y

View non-identifiable analysis results of protected data

Y

Y

Y

Y

Discover differentially or co-expressed genes, mutually exclusive genomic events

Y

Annotations from other resources

Y

Y

Y

Y

Programmatic data download

Y

Y

Y

Y

Download BAMs, VCFs, primary files

Y

Download secondary processed data

Y

Y

Y

Y