Fig. 7: t-SNE plots for the pancreas data. | Nature Communications

Fig. 7: t-SNE plots for the pancreas data.

From: Flexible experimental designs for valid single-cell RNA-sequencing experiments allowing batch effects correction

Fig. 7

a t-SNE plots colored by batch. b t-SNE plot colored by FACS cell type labels. c The boxplot of silhouette coefficients for all of the compared methods. In the boxplot, the central line denotes the median; the upper and lower bounds represent the first and third quartiles; and the whiskers extend to a maximum of 1.5 times the interquartile (IQR) beyond the box, where the IQR is the difference between the third and the first quartiles. d The expression levels of six marker genes, GCG for alpha cells, INS for beta cells, SST for gamma cells, PPY for delta cells, PRSS1 for acinar cells, and KRT19 for ductal cells, shown in the t-SNE plot of the corrected count data of BUSseq, respectively.

Back to article page