Fig. 4: Extracted parameters of α3D folding from 3c-PIE and 3c-CW. | Nature Communications

Fig. 4: Extracted parameters of α3D folding from 3c-PIE and 3c-CW.

From: Fast three-color single-molecule FRET using statistical inference

Fig. 4

a Relaxation rate k (= kF + kU) from 3c-PIE (blue) and 3c-CW (red). b Fraction of the folded state pF from 3c-PIE (blue) and 3c-CW (red). c Folded state FRET efficiency E1F from two color (black), 3c-PIE (blue), and 3c-CW (red). d Unfolded state FRET efficiency E1U from two color (black), 3c-PIE (blue), 3c-CW (red), and E1U3c calculated using the Gaussian chain model with parameters obtained from two-color FRET efficiency for 3c-CW (green) and 3c-PIE (purple) (see Methods). In c, d, E13c values of 3c-CW were determined using E22c from two-color (DA2) segments. E13c values of 3c-PIE were calculated using E122c obtained from A1 excitation. e FRET efficiencies between A1 and A2 in the folded (E12F2c) and unfolded (E12U2c) states in 3c-CW using two-color E22c (red), the unfolded state FRET efficiency calculated using the Gaussian chain model (green), and E12F2c and E12U2c determined from 3c-PIE by A1 excitation (blue). Error bars are standard deviations calculated from the curvature at the maximum of the likelihood function. Source data are provided as a Source Data file.

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