Fig. 2: Comparison of Nanopore long read with short-read scRNA-seq.
From: High throughput error corrected Nanopore single cell transcriptome sequencing
Number of genes a and number of UMIs b detected for each cell of the 190 and 951 cell datasets after Illumina and Nanopore sequencing. Median genes a and UMIs b per cells for both datasets are shown in the histograms. c Correlation of gene expression between Illumina and Nanopore sequencing data for each cell. Boxes represent the 25% quantile to 75% quantile range, upper and lower edges of notches are median +/− 1.58 * IQR/sqrt(n) (IQR: inter quantile range, n = 1121). t-SNE plots of Illumina gene expression d and Nanopore isoform expression e for 1121 cells (integration of the 190 and 951 cell datasets). Colors for individual cells are the same in d and e. Clustering details are in Supplementary Fig. 8 and Supplementary Data 1.
