Fig. 3: Overall performance of QC-benchmarked HRMS1-DIA workflow. | Nature Communications

Fig. 3: Overall performance of QC-benchmarked HRMS1-DIA workflow.

From: Standardization and harmonization of distributed multi-center proteotype analysis supporting precision medicine studies

Fig. 3

a The number of proteins identified in both samples A and B (with a 1% FDR) at each laboratory was plotted over the 7-day evaluation period (indicated by shades of green). b The number of proteins quantified in total and for each individual organism in controlled samples (based on criteria described in the Methods section) at each laboratory is plotted over the 7-day evaluation period. Quantified proteins are shown in purple for E.coli, in blue for yeast, in green for human and in gray for total. For laboratory 5, which had an extended evaluation period of 9 days, due to technical issues detected, addressed, and resolved during day 7, the identification (a) and quantification (b) results obtained for day 9 substitutes those of day 7. Source data are provided as a Source Data file.

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