Fig. 2: Evidence for an active DNA transposon in Salmo evolution.
From: The structural variation landscape in 492 Atlantic salmon genomes
Phylogenetic tree of Atlantic salmon sequences representing deletion polymorphisms matching the pTSsa2 piggyBac-like DNA transposon28 (EF685967) and 100 top hits to this sequence within the brown trout genome. The tree was generated from an alignment spanning the length of pTSsa2 (Supplementary Data 8) using the TPM3+F+G4 substitution model. Bootstrap values are given at key nodes. A full tree with sequence identifiers, genomic locations of pTSsa2 sequences and bootstrap values is provided in Supplementary Fig. 18. A circos plot highlighting the location of pTSsa2 sequences in the Atlantic salmon genome is given in Supplementary Fig. 19.
