Fig. 3: The distribution of SNPs and iSNVs in the viral genomes sequenced in this study. | Nature Communications

Fig. 3: The distribution of SNPs and iSNVs in the viral genomes sequenced in this study.

From: Genomic surveillance of COVID-19 cases in Beijing

Fig. 3

a The numbers of SNPs and iSNVs in each cluster. The number of genomes in each cluster are displayed in the brackets. b The distribution (left) and frequency (right) of SNPs identified in the 102 genomes of the three groups and seven clusters. The red dots represent the positions of SNPs. The histogram shows the frequencies of the SNPs in each cluster. c The distribution (left), frequency (middle), and minor allele frequency (right) of iSNVs identified in the 102 genomes of the three groups and seven clusters. The green dots represent the positions of iSNVs. The histograms show the frequencies of the iSNVs in the enrolled population. The boxplots and scatter plots show the minor allele frequency of iSNVs. Boxplots indicate median (middle line), the first and third quartiles (box), the first quartile minus 1.5-fold the interquartile range, and the third quartile plus 1.5-fold the interquartile range. Source data are provided as a Source Data file.

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