Fig. 3: ChromSCape identifies immune cell populations from scATAC-seq datasets.
From: Interactive analysis of single-cell epigenomic landscapes with ChromSCape
(a) t-SNE representations after correlation filtering (n = 1309 cells), points are colored according to sample of origin (left) or ChromSCape-determined clusters (k = 5) (right). The GM12878 and K562 samples contained respectively 4 and 6 replicates. (b) Assignment scores for each sample/cluster pair for the analysis with all samples. (c, d) As in (a) and (b) for the analysis with only AML, LSC, monocyte, LMPP & HL60 cells (n = 347 cells).
