Table 1 Quality metrics for the donkey genome assembly generated in the current work and for other donkey and horse genome assemblies published in previous studies.
From: Donkey genomes provide new insights into domestication and selection for coat color
Donkey | Horse | ||||
|---|---|---|---|---|---|
This study | Renaud et al. (2018) | Huang et al. (2015) | EquCab3.0 | EquCab2.0 | |
Total number of scaffolds | 43 | 9021 | 2167 | 4701 | 9687 |
N50 contigs | 7.92 Mb | 140.3 kb | 66.7 kb | 4.50 Mb | 112 kb |
N50 scaffolds (Mb) | 93.37 | 15.4 | 3.8 | 87.23 | 46.75 |
Coverage | 211× | 61.2× | 42.4× | 88.0× | 6.8× |
Total bases (Gb) | 2.432 | 2.320 | 2.391 | 2.507 | 2.475 |
Largest scaffold (Mb) | 209.96 | 84.20 | 17.06 | – | – |
Total number of predicted protein-coding genes | 21,983 | 18,984 | 23,850 | – | 20,421 |
