Table 2 Table showing the details of the sample number, average read length, number of reads and number of reads mapped to each subgenomic SARS-CoV-2 RNA.
Sample | Average read length | Number of reads in millions | S Orf2 | Orf3a | E Orf4 | M Orf5 | Orf6 | Orf7a | Orf7b | Orf8 | N Orf9 | Orf10 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
GC-28/67 | 76 | 1.8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
GC-26/66 | 207 | 14.3 | 1611 | 17,702 | 18,165 | 5793 | 7066 | 19,443 | 0 | 807 | 20,156 | 0 |
GC-13/35 | 149 | 1.6 | 1 | 17 | 17 | 9 | 14 | 72 | 0 | 17 | 81 | 0 |
GC-11/34 | 73 | 1.2 | 8 | 29 | 98 | 63 | 58 | 592 | 0 | 250 | 35 | 0 |
GC-11/38 | 184 | 3.3 | 179 | 2464 | 1715 | 1702 | 1587 | 4107 | 0 | 406 | 5071 | 0 |
GC-20/63 | 83 | 1.3 | 0 | 0 | 133 | 1 | 972 | 0 | 0 | 0 | 0 | 0 |
GC-24/61 | 115 | 2.3 | 0 | 0 | 16,067 | 283 | 0 | 5132 | 0 | 0 | 14,442 | 0 |
GC-12/36 | 163 | 1.3 | 0 | 4 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 0 |
GC-14/33 | 153 | 6 | 15 | 57 | 77 | 99 | 60 | 261 | 0 | 42 | 174 | 0 |
GC-14/37 | 185 | 5.2 | 243 | 6798 | 5691 | 5548 | 6551 | 12,898 | 0 | 1539 | 33,261 | 0 |
GC-23/60 | 150 | 5.2 | 204 | 74 | 11,117 | 304 | 12,972 | 6902 | 0 | 1463 | 51,614 | 0 |
GC-51/62 | 100 | 2.6 | 0 | 0 | 0 | 89 | 0 | 19,847 | 0 | 0 | 15,130 | 0 |
GC-21/64 | 92 | 3 | 0 | 0 | 0 | 88 | 0 | 9408 | 0 | 1052 | 3966 | 0 |
GC-25/65 | 84 | 5.1 | 2 | 10 | 16,581 | 1249 | 16,655 | 158,755 | 0 | 11,990 | 1841 | 0 |
GC-55/68 | 84 | 3.9 | 13 | 21 | 35,701 | 4453 | 4265 | 166,578 | 5 | 3328 | 942 | 0 |
