Fig. 1: Construction of JG1. | Nature Communications

Fig. 1: Construction of JG1.

From: Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference

Fig. 1

a PCA plot showing that the three sample donors are within the Japanese population cluster. The Japan map is retrieved from the Geospatial Information Authority of Japan (https://www.gsi.go.jp/kankyochiri/gm_jpn.html). b Idiogram showing the regions sequenced for each chromosome in JG1. Red and blue boxes indicate scaffolds; the red box spans an entire chromosomal arm. Dark gray boxes denote E-gaps, which represent links connected by genetic and RH maps or gaps inserted according to other evidence. Pink boxes denote N-gaps, which are unresolved regions linked by Bionano genome maps, or the putative PAR1 region in the Y chromosome. c Harr plot representing the co-linearity between the reference genome GRCh38 and JG1. PCA principal component analysis, RH radiation hybrid, PAR pseudo-autosomal region. Source data for a are provided as a Source Data file.

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