Table 2 Diplegia cohort variant characteristics.

From: Construction and integration of three de novo Japanese human genome assemblies toward a population-specific reference

IDa

Family

Type

Locus

Variant(s)

Variant effect prediction

Mode of inheritance

3

FD-05

trio

CTNNB1

c.1683 + 2 T > C

HIGH (splice donor)

de novo SNV

5

FD-07

trio

CYP2U1

c.651delC

HIGH (frame shift)

autosomal recessive deletion

6

FD-08

trio

SPAST

c.1276 C > T

MODERATE (missense)

de novo SNV

7

FD-09

quartet

GNAO1

c.736 G > A

MODERATE (missense)

de novo SNV

9

FD-11

trio

CACNA1A

c.653 C > T

MODERATE (missense)

de novo SNV

10

FD-12

trio

SPAST

c.1496 G > A

MODERATE (missense)

de novo SNV

11

FD-13

trio

AMPD2

c.515 + 1 G > A; c.1724C > T

HIGH (splice donor); MODERATE (missense)

compound heterozygous SNV

  1. aCase ID from Table 2 in Takezawa et al.46.