Table 2 Read statistics before and after error correction.
From: Error correction enables use of Oxford Nanopore technology for reference-free transcriptome analysis
Dataset | Uncorrected full-length reads | isONcorrect corrected full-length reads | RATTLE corrected full-length reads | |||||
|---|---|---|---|---|---|---|---|---|
#aligned | Median diff to ref (%) | #aligned | Median diff to ref (%) | # reads with more errors after correction | #aligned | Median diff to ref (%) | # reads with more errors after correction | |
SIM-full | 3,500,000 | 7.0 | 3,500,000 | 0.4 | 1578 | – | – | – |
SIM-ca | 57,804 | 7.0 | 57,804 | 0.6 | 214 | 57,804 | 0.4 | 6541 |
SIRV | 1,512,325 | 6.9 | 1,512,450 | 0.4 | 2295 | 1,512,929 | 1.1 | 488,593 |
Drosophila | 3,327,355 | 7.0 | 3,369,876 | 1.1 | 11,369 | 3,395,958 | 0.9 | 52,125 |
ONT-old | 874,531 | 13.4 | 879,188 | 3.4 | 21,441 | 875,346 | 3.1 | 13,233 |
