Fig. 1: Design and synthesis of biotin-phenol (BP) derivatives with high reactivity. | Nature Communications

Fig. 1: Design and synthesis of biotin-phenol (BP) derivatives with high reactivity.

From: Spatiotemporal profiling of cytosolic signaling complexes in living cells by selective proximity proteomics

Fig. 1

a Design of different BP derivatives with substituents at para-position (red), ortho-position (blue), and with aromatic amine structures (orange). b Scheme of proximity labeling catalyzed by peroxidases in living cells and in vitro. c Consumption rate of BP derivatives in the presence of 10 nM HRP and 500 μM H2O2 for 20 min. Each dot represents the indicated data of one independent experiment. Data are presented as mean values ± standard divations (s.d.; n = 3 independent biological experiments). d Streptavidin western blot analysis of labeling activity of BP1, BP5, BP10, and BN2 in living HeLa cells with stably expressed APEX2-FLAG-GRB2 fusion protein (n = 3 independent biological experiments). After incubating the cells with probes for 30 min, 500 µM of H2O2 was added for 1 min reaction. Quantification was presented in Supplementary Fig. 12a. e, f Comparison between BP1 and BP5 reactivity with or without tyrosine when incubated together. Data are presented as mean values ± s.d. Error bars in c, e, and f represent s.d. as quantified by LC-MS (n = 3 independent biological experiments). Source data are provided as a Source Data file.

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