Fig. 2: Comparative genomics between P. lunatus and P. vulgaris.
From: Comprehensive genomic resources related to domestication and crop improvement traits in Lima bean
a Ks and b Ka/Ks statistics for P. lunatus and G. max paralogs, as well as orthologs between P. lunatus and P. vulgaris and orthologs between P. lunatus and V. unguiculata. WGD: Whole Genome Duplication. Sample sizes (N) correspond to gene pairs. Middle lines are medians and box limits represent first (Q1) and third (Q3) quartiles. Lines are drawn from Q1 minus 1.5 of the interquartile range (IQR) to Q3 + 1.5*IQR. c Chromosome by chromosome synteny between P. lunatus and P. vulgaris for detailed visualization of structural rearrangements. P. lunatus chromosomes are labeled as Pl01-Pl11 and P. vulgaris chromosomes are labeled as Pv01-Pv11. d Number of homologs of resistance genes by chromosome. e NJ Radial tree diagram showing genetic variability among LRR type resistance genes. Light blue is proteins with domains NB-ARC and LRR, purple is proteins with domains TIR, NB-ARC, and LRR, orange is proteins with the TIR and LRR domains. Source data are provided as a Source Data file.
