Fig. 3: Pseudo-time inference of three mouse embryo development data sets (Yan, Goolam, and Deng) using scDHA and Monocle.
From: Fast and precise single-cell data analysis using a hierarchical autoencoder
a Visualized time-trajectory of the Yan data set in the first two t-SNE dimensions using scDHA (left) and Monocle (right). b Pseudo-temporal ordering of the cells in the Yan data set. The horizontal axis shows the inferred time for each cell while the vertical axis shows the true developmental stages. c, d Time-trajectory of the Goolam data set. Monocle is unable to estimate the time for most cells in 8cell, 16cell, and blast (colored in gray). e, f Time-trajectory of the Deng data set. Monocle is unable to estimate the pseudo-time for most blast cells.
