Fig. 7: Phylogenetic analysis of the gag-pol sequences of macaque 6520 and 40166.
From: Persistence of viral RNA in lymph nodes in ART-suppressed SIV/SHIV-infected Rhesus Macaques
Gag-pol sequences from SIVmac251 infected animals 6520 (Late ART cohort) and 40166 (Early ART cohort) isolated by single genome amplification (SGA). Viral sequences were sampled at challenge (in red), were derived from pre-ART plasma (in blue), and from lymph nodes at necropsy during ART suppression (in green). The root of each tree is the consensus challenge stock (black square). Branch length distance defined as number of mutations per base. MesLN, mesenteric LN, GenLN, genital LN, IngLN, inguinal LN, AxLN, axillary LN, ParaLN, pararectal LN.
