Fig. 5: Molecular clock dating reveals early and repeated emergence of extant hospital-associated (HA) E. faecalis Population Partitioning Using Nucleotide K-mers (PopPUNK; PP)19 clusters. | Nature Communications

Fig. 5: Molecular clock dating reveals early and repeated emergence of extant hospital-associated (HA) E. faecalis Population Partitioning Using Nucleotide K-mers (PopPUNK; PP)19 clusters.

From: Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era

Fig. 5

a PP2 (n = 189). b PP6 (n = 97). c PP18 (n = 31). Dated maximum clade credibility trees were estimated based on median values from Bayesian Evolutionary Analysis by Sampling Trees (BEAST2) v.2.5.083,84,85 using strict clock model and constant tree. Blue error bars represent the 95% highest probability density (HPD) intervals of median tree heights. The time scale is shown in years. Source data are provided as a Source Data file.

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