Fig. 4: Class-specific expression of TEs in somatic cells. | Nature Communications

Fig. 4: Class-specific expression of TEs in somatic cells.

From: Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

Fig. 4

a UMAP plots of the Tabula Muris data, using both genes and TEs as analyzed with scTE. The tissue sources for the cells are indicated. b UMAP plot as in (a), but clustered into groups (Leiden, resolution = 0.5). c Same as (b), but cells are colored by the expression of indicated genes/TEs. d Correlation heatmap showing the co-expression of TFs and TEs. e UMAP plots showing the expression of indicated TFs and TEs. f Read count tag density pileups for TCF7, SOX2, and TFAP2C ChIP-seq data on the indicated TEs.

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