Fig. 1: ChromHMM integrates ChIP-seq data to predict chromatin states. | Nature Communications

Fig. 1: ChromHMM integrates ChIP-seq data to predict chromatin states.

From: Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research

Fig. 1

a Experimental design schematic for the study. b Emission probabilities of the 14-state ChromHMM model. c Percent of the genome annotated with any functional state (any state except “Low Signal”). d The number of regulatory elements identified in each species, separated by TSS proximal (within 2 kb of annotated TSS), genic (overlapping annotated gene body), and intergenic. e Percentage of regulatory elements that co-occurred with open chromatin in the tissues in which they were active.

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