Table 1 Table of brain structure abbreviations.
From: Connectivity characterization of the mouse basolateral amygdalar complex
Acronym | Full structure name |
|---|---|
AAA | Anterior amygdalar area |
ac | Anterior commissure |
ACAd | Anterior cingulate cortical area, dorsal part |
 cACAd |  Anterior cingulate cortical area, dorsal part, caudal region |
 rACAd |  Anterior cingulate cortical area, dorsal part, rostral region |
ACAv | Anterior cingulate cortical area, ventral part |
 cACAv |  Anterior cingulate cortical area, ventral part, caudal region |
 rACAv |  Anterior cingulate cortical area, ventral part, rostral region |
ACB | Nucleus accumbens |
AD | Anterodorsal nucleus of the thalamus |
ADP | Anterodorsal preoptic nucleus of the hypothalamus |
AHN | Anterior hypothalamic nucleus |
AI | Agranular insular cortical area |
 AId |  Agranular insular cortical area, dorsal part |
 AIp |  Agranular insular cortical area, posterior part |
 AIv |  Agranular insular cortical area, ventral part |
AM | Anteromedial nucleus of the thalamus |
 AMd |  Anteromedial nucleus of the thalamus, dorsal part |
 AMv |  Anteromedial nucleus of the thalamus, ventral part |
AON | Anterior olfactory nucleus |
 AONm |  Anterior olfactory nucleus, medial part |
 AONpv |  Anterior olfactory nucleus, posteroventral part |
ARH | Arcuate hypothalamic nucleus |
AUD | Auditory cortical area |
 AUDd |  Dorsal auditory cortical area |
 AUDp |  Primary auditory cortical area |
 AUDv |  Ventral auditory cortical area |
AV | Anteroventral nucleus of the thalamus |
AVP | Anteroventral preoptic nucleus |
AVPV | Anteroventral periventricular nucleus |
bic | Brachium of the inferior colliculus |
BLA | Basolateral amygdalar complex |
 BLAa |  Basolateral amygdalar nucleus, anterior part |
 BLA.ac |  Basolateral amydalar nucleus, anterior part, caudal domain |
 BLA.al |  Basolateral amydalar nucleus, anterior part, lateral domain |
 BLA.am |  Basolateral amydalar nucleus, anterior part, medial domain |
 BLAp |  Basolateral amygdalar nucleus, posterior part |
 BLAv |  Basolateral amygdalar nucleus, ventral part |
BMA | Basomedial amygdalar nucleus |
 BMAa |  Basomedial amygdalar nucleus, anterior part |
 BMAp |  Basomedial amygdalar nucleus, posterior part |
BST | Bed nucleus of the stria terminalis |
 BSTal |  Bed nucleus of the stria terminalis, anterolateral nucleus |
 BSTam |  Bed nucleus of the stria terminalis, anteromedial nucleus |
 BSTdm |  Bed nucleus of the stria terminalis, dorsomedial nucleus |
 BSTif |  Bed nucleus of the stria terminalis, interfascicular nucleus |
 BSTmg |  Bed nucleus of the stria terminalis, magnocellular nucleus |
 BSTpr |  Bed nucleus of the stria terminalis, principal nucleus |
 BSTtr |  Bed nucleus of the stria terminalis, transverse nucleus |
 BSTv |  Bed nucleus of the stria terminalis, ventral nucleus |
CA1 | Hippocampal field CA1 |
 CA1d |  CA1 dorsal |
 CA1_slm |  CA1 stratum lacunosum-moleculare |
 CA1_so |  CA1 stratum oriens |
 CA1_sp |  CA1 pyramidal layer |
 CA1_sr |  CA1 stratum radiatum |
 CA1v |  CA1 ventral |
CA2 | Hippocampal field CA2 |
 CA2_so |  CA2 stratum oriens |
CA3 | Hippocampal field CA3 |
 CA3_so |  CA3 stratum oriens |
 CA3_sp |  CA3 pyramidal layer |
CEA | Central amygdalar nucleus |
CLA | Claustrum |
CM | Central medial nucleus of the thalamus |
COA | Cortical amygdalar area |
 COAa |  Cortical amygdalar area, anterior part |
 COApl |  Cortical amygdalar area, posterior part, lateral zone |
 COApm |  Cortical amygdalar area, posterior part, medial zone |
CP | Caudoputamen |
 CPc |  Caudoputamen, caudal part |
 CPc.dm |  Caudoputamen, caudal part, dorsomedial domain |
 CPc.v |  Caudoputamen, caudal part, ventral domain |
 CPi |  Caudoputamen, intermediate part |
 CPi.dm |  Caudoputamen, intermediate part, dorsomedial domain |
 CPi.v |  Caudoputamen, intermediate part, ventral domain |
 CPi.vl |  Caudoputamen, intermediate part, ventrolateral domain |
 CPi.vm |  Caudoputamen, intermediate part, ventromedial domain |
DMH | Dorsomedial nucleus of the hypothalamus |
DP | Dorsal peduncular area |
ECT | Ectorhinal cortical area |
 cECT |  Ectorhinal cortical area, caudal region |
 rECT |  Ectorhinal cortical area, rostral region |
ENT | Entorhinal cortical area |
 ENTl |  Entorhinal cortical area, lateral part |
 cENTl |  Entorhinal cortical area, lateral part, caudal region |
 rENTl |  Entorhinal cortical area, lateral part, rostral region |
ENTm | Entorhinal cortical area, medial part |
EP | Endopiriform nucleus |
 EPd |  Endopiriform nucleus, dorsal part |
 EPv |  Endopiriform nucleus, ventral part |
fr | Fasciculus retroflexus |
FS | Fundus of the striatum |
GU | Gustatory cortical area |
IAD | Interanterodorsal nucleus of the thalamus |
ILA | Infralimbic cortical area |
IMD | Intermediodorsal nucleus of the thalamus |
int | Internal capsule |
LA | Lateral amygdalar area |
LD | Laterodorsal nucleus of the thalamus |
LHA | Lateral hypothalamic area |
LP | Lateral posterior nucleus of the thalamus |
LPO | Lateral preoptic nucleus |
LS | Lateral septal nucleus |
 LSc |  Lateral septal nucleus, caudal part |
 LSr |  Lateral septal nucleus, rostral part |
 LSv |  Lateral septal nucleus, ventral part |
MB | Midbrain |
MD | Mediodorsal nucleus of the thalamus |
 MDm |  Mediodorsal nucleus of the thalamus, medial part |
MEA | Medial amygdalar nucleus |
 MEAad |  Medial amygdalar nucleus, anterodorsal part |
 MEAav |  Medial amygdalar nucleus, anteroventral part |
 MEApd |  Medial amygdalar nucleus, posterodorsal part |
 MEApv |  Medial amygdalar nucleus, posteroventral part |
MEPO | Median preoptic nucleus |
MG | Medial geniculate complex |
 MGd |  Medial geniculate complex, dorsal part |
 MGm |  Medial geniculate complex, medial part |
 MGv |  Medial geniculate complex, ventral part |
MM | Medial mammillary nucleus |
MOp | Primary motor cortical area |
 MOp m |  Primary motor cortical area, mouth region |
 MOp ul |  Primary motor cortical area, upper limb region |
 rMOp |  Primary motor cortical area, rostral region |
MOs | Secondary motor cortical area |
 MOs fef |  Secondary motor cortical area, frontal eye field region |
 MOs ul |  Secondary motor cortical area, upper limb region |
 rMOs |  Secondary motor cortical area, rostral region |
MPN | Medial preoptic nucleus |
MPO | Medial preoptic area |
MRN | Midbrain reticular nucleus |
MS | Medial septal nuclei |
mtt | Mammillothalamic tract |
NDB | Nucleus of the diagonal band |
NLOT | Nucleus of the lateral olfactory tract |
ORB | Orbital cortical area |
 ORBl |  Orbital cortical area, lateral part |
 ORBm |  Orbital cortical area, medial part |
 ORBvl |  Orbital cortical area, ventrolateral part |
OT | Olfactory tubercle |
PA | Posterior amygdalar nucleus |
PAA | Piriform amygdalar area |
PAR | Parasubiculum |
PERI | Perirhinal cortical area |
 cPERI |  Perirhinal cortical area, caudal region |
 rPERI |  Perirhinal cortical area, rostral region |
PF | Parafascicular nucleus of the thalamus |
PH | Posterior hypothalamic nucleus |
PIR | Piriform cortical area |
PL | Prelimbic cortical area |
PMv | Ventral premammillary nucleus |
POST | Postsubiculum |
PP | Peripeduncular nucleus |
PRE | Presubiculum |
PT | Parataenial nucleus of the thalamus |
PTLp | Posterior parietal association area |
PVp | Periventricular hypothalamic nucleus, posterior part |
PVT | Paraventricular nucleus of the thalamus |
 cPVT |  Paraventricular nucleus of the thalamus, caudal region |
 rPVT |  Paraventricular nucleus of the thalamus, rostral region |
RCH | Retrochiasmatic area |
RE | Reuniens nucleus of the thalamus |
RH | Rhomboid nucleus of the thalamus |
RR | Retrorubral area |
RSP | Retrosplenial cortical area |
 RSPagl |  Retrosplenial cortical area, agranular part |
 RSPd |  Retrosplenial cortical area, dorsal part |
 RSPv |  Retrosplenial cortical area, ventral part |
RT | Reticular nucleus of the thalamus |
SC | Superior colliculus |
SI | Substantia innominata |
sm | Stria medullaris |
SN | Substantia nigra |
 SNc |  Substantia nigra, compact part |
 SNr |  Substantia nigra reticular part |
SPFp | Subfascicular nucleus, parvocellular part |
SSp | Primary somatosensory cortical area |
 SSp m |  Primary somatosensory cortical area, mouth region |
SSs | Supplementary somatosensory cortical area |
SUB | Subiculum |
 SUBd |  Subiculum, dorsal part |
 SUBv |  Subiculum, ventral part |
 SUBv_m |  Subiculum, ventral part, molecular layer |
 SUBv_sp |  Subiculum, ventral part, pyramidal layer |
 SUBv_sr |  Subiculum, ventral part, stratum radiatum |
TEa | Temporal association cortical area |
 cTEa |  Temporal association cortical area, caudal region |
 rTEa |  Temporal association cortical area, rostral region |
TM | Tuberomammillary nucleus |
 TMd |  Tuberomammillary nucleus, dorsal part |
 TMv |  Tuberomammillary nucleus, ventral part |
TR | Postpiriform transition area |
TT | Taenia tecta |
 TTd |  Taenia tecta, dorsal part |
 TTv |  Taenia tecta, ventral part |
TU | Tuberal nucleus |
VIS | Visual cortical area |
 VISal |  Anterolateral visual cortical area |
 VISam |  Anteromedial visual cortical area |
 VISl |  Lateral visual cortical area |
 VISp |  Primary visual cortical area |
VISC | Visceral cortical area |
VLPO | Ventrolateral preoptic nucleus |
VMH | Ventromedial hypothalamic nucleus |
 VMHd |  Ventromedial hypothalamic nucleus, dorsal part |
VP | Ventral pallidum |
VPMpc | Ventral posteromedial nucleus of the thalamus, parvocellular part |
