Table 1 A. strigosa S75 genome statistics and gene predictions.
From: Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals
Number | Size | |
|---|---|---|
Assembly feature | ||
Estimated genome size | 4.1 Gb | |
Assembled sequences | 3,530,496,476 bp | |
N50 length (contig) | 4,770,050 bp | |
Longest contig | 28,939,783 bp | |
N50 length (scaffolds) | 73,363,070 bp | |
N80 (scaffolds) | 31,630,497 bp | |
Number of scaffolds (>N80) | 35 | |
Longest scaffold | 272,903,458 bp | |
Transposable elements | ||
Retrotransposons | 2,390,363,061 bp (67.7%) | |
DNA transposons | 219,943,352 bp (6.2%) | |
Other | 254,548,795 bp (7.2%) | |
Total | 2,864,878,992 bp (81.1%) | |
Genome annotation | ||
Gene models (high confidence) | 39,885 | 148,367,003 bp |
Gene models (lower confidence) | 36,816 | 92,666,279 bp |
Noncoding RNAs | 1999 | 197,635 bp |
