Fig. 6: De novo identification of multiple Borrelia burgdorferi strains from PacBio metagenomic data.
From: Detecting and phasing minor single-nucleotide variants from long-read sequencing data
a The IGV snapshot of the contigs inferred by iGDA from the metagenomic data. Each contig is grouped with its closest real contig (B. burgdorferi strain). b Multilocus Sequence Typing (MLST) of B. burgdorferi in the metagenomic data. The columns are the alleles of the eight house-keeping genes used in MLST. Each row is the alleles of the genome of each sample (strain). The row names are the accession numbers of each sample in Sequence Read Archive (SRA, https://www.ncbi.nlm.nih.gov/sra). An allele is detected if it matches a contig inferred by iGDA. There are two alleles that have no 100% match in the MLST database, and their similarities to the closest alleles in the database are shown in the brackets. All the other alleles have a 100% match in the database. Source data are provided as a Source Data file.
