Table 2 Comparison of ‘medium’ and ‘high’ method using single-cell samples.
From: Quantitative single-cell proteomics as a tool to characterize cellular hierarchies
Medium (300 ms) | High (500 ms) | |
|---|---|---|
Protein IDs | 2,076 | 1,790 |
Peptide IDs | 11,111 | 8,826 |
PSMs | 127,196 | 89,939 |
PSM rate (%) | 24 | 25.4 |
Median s/n in single-cell channels | 5.4 | 8.75 |
Mean protein IDs per file | 1,287 | 999 |
Filtered cells | 302 | 255 |
Filtered proteins | 1,986 | 1,498 |
Mean protein IDs per cell | 1,076 | 712.3 |
Missing values (%) | 45.8 | 52.45 |
