Fig. 2: Motif matching. | Nature Communications

Fig. 2: Motif matching.

From: Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely occurring RNA modifications

Fig. 2

Some motifs identified from MultiRM are similar to those identified from conventional motif analysis (DREME and STREME). \(p\) value# was calculated using TOMTOM by utilizing a null model containing MultiRM’s motif columns from all the columns in the set of DREME and STREME motifs. \(p\) value## in DREME was calculated by a one-sided fisher’s exact test. \(p\) value### in STREME was calculated by a one-sided binomial test. The motifs within the blue dashed anchor boxes were extracted to do pair comparisons. IG scores were calculated by the average of the contribution scores of each nucleotide obtained by the integrated gradients method. Accession codes for the data used to generate this figure are found in Table 5.

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